Publications
Selected publications base on data generated by
ATLAS Biolabs or its parent company.
Publications citing ATLAS´ employees as (co-)authors are listed
with a  symbol.
Affymetrix Expression Profiling
- Szakasits, D., P. Heinen, et al. (2008). "The Transcriptome of Syncytia Induced by the Cyst Nematode Heterodera schachtii in Arabidopsis Roots." Plant J.
- Wagner, F. and U. Radelof (2007). "Performance of different small sample RNA amplification techniques for hybridization on Affymetrix GeneChips." J Biotechnol 129(4): 628-34.
- Hecht, J., V. Seitz, et al. (2007). "Detection of novel skeletogenesis target genes by comprehensive analysis of a Runx2(-/-) mouse model." Gene Expr Patterns 7(1-2): 102-12.
-
Hannah MA, Wiese D, Freund S, Fiehn O, Heyer AG, Hincha DK (2006). Natural genetic variation of freezing tolerance in Arabidosis. Plant Physiology 142, 98-112.
-
Zubakov, D., Z. Stupar, et al. (2006). "Differential expression of a new isoform of DLG2 in renal oncocytoma." BMC Cancer 6: 106.
-
Blasing, O. E., Y. Gibon, et al. (2005). "Sugars and circadian regulation make major contributions to the global regulation of diurnal gene expression in Arabidopsis." Plant Cell 17(12): 3257-81.
- Hannah, M. A., A. G. Heyer, et al. (2005). "A Global Survey of Gene Regulation during Cold Acclimation in Arabidopsis thaliana." PLoS Genet 1(2): e26.
-
Thimm, O., O. Blasing, et al. (2004). "MAPMAN: a user-driven tool to display genomics data sets onto diagrams of metabolic pathways and other biological processes." Plant J 37(6): 914-39.
-
Becher, M., I. N. Talke, et al. (2004). "Cross-species microarray transcript profiling reveals high constitutive expression of metal homeostasis genes in shoots of the zinc hyperaccumulator Arabidopsis halleri." Plant J 37(2): 251-68.
- Coll-Garcia, D., J. Mazuch, et al. (2004). "EXORDIUM regulates brassinosteroid-responsive genes." FEBS Lett 563(1-3): 82-6.
-
Czechowski, T., R. P. Bari, et al. (2004). "Real-time RT-PCR profiling of over 1400 Arabidopsis transcription factors: unprecedented sensitivity reveals novel root- and shoot-specific genes." Plant J 38(2): 366-79.
-
Baum, M., S. Bielau, et al. (2003). "Validation of a novel, fully integrated and flexible microarray benchtop facility for gene expression profiling." Nucleic Acids Res 31(23): e151.
- Müssig C, Altmann T. (2003) Changes in gene expression in response to altered SHL transcript levels.Plant Mol Biol. 53(6):805-20.
Affymetrix SNP Genotyping Including GWAS
-
Vater, I., F. Wagner, et al. (2009). "GeneChip analyses point to novel pathogenetic mechanisms in mantle cell lymphoma." Br J Haematol 144(3): 317-31.
-
Nowak, D., F. Nolte, et al. (2009). "Genome-wide DNA-mapping of CD34+ cells from patients with myelodysplastic syndrome using 500K SNP arrays identifies significant regions of deletion and uniparental disomy." Exp Hematol 37(2): 215-224.
-
Nielander, I., J. I. Martin-Subero, et al. (2008). "Recurrent loss of the Y chromosome and homozygous deletions within the pseudoautosomal region 1: association with male predominance in mantle cell lymphoma." Haematologica 93(6): 949-50.
-
Franke, A., J. Hampe, et al. (2007). "Systematic Association Mapping Identifies NELL1 as a Novel IBD Disease Gene." PLoS ONE 2: e691.
- Nielaender, I., J. I. Martin-Subero, et al. (2006). "Partial uniparental disomy: a recurrent genetic mechanism alternative to chromosomal deletion in malignant lymphoma." Leukemia 20(5):
904-5.
Agilent Expression Profiling
Molecular Karyotyping / Comparative Genomic Hybridization (CGH)
- Schneider KU, Dietrich D, Fleischhacker M, Leschber G, Merk J, Schäper F, Stapert HR, Vossenaar ER, Weickmann S, Liebenberg V, Kneip C, Seegebarth A, Erdogan F, Rappold G, Schmidt B. Correlation of SHOX2 gene amplification and DNA methylation in lung cancer tumors. BMC Cancer. 2011 Mar 22;11:102.
-
Spiegel R, Horovitz Y, Peters H, Erdogan F, Chervinsky I, Shalev SA. A new autosomal recessive syndrome characterized by ocular hypertelorism, distinctive face, mental retardation, brachydactyly, and genital abnormalities. Am J Med Genet A. 2009 Dec;149A(12):2655-60.
Sequence Enrichment and Next-Generation-Sequencing
|
